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PBBSC FY MICROBIOLOGY UNIT 9

  • Viruses.

Viruses

Viruses are microscopic infectious agents that require a host cell to replicate. They infect all forms of life, including animals, plants, fungi, and bacteria, causing a wide range of diseases.


Characteristics of Viruses

  1. Structure:
    • Composed of a nucleic acid core (DNA or RNA) surrounded by a protein coat (capsid). Some viruses have an additional lipid envelope.
  2. Size:
    • Extremely small, ranging from 20–300 nanometers.
  3. Obligate Intracellular Parasites:
    • Cannot reproduce or carry out metabolic activities outside a host cell.
  4. Genetic Material:
    • Can be DNA or RNA, but not both.
    • May be single-stranded (ss) or double-stranded (ds).
  5. Replication:
    • Depend entirely on the host cell’s machinery to reproduce.
  6. Host Specificity:
    • Infect specific cell types in specific hosts (e.g., HIV targets human T-helper cells).

Structure of Viruses

  1. Capsid:
    • Protein coat made of subunits called capsomeres.
    • Protects the nucleic acid and aids in attachment to host cells.
    • Shapes:
      • Icosahedral (e.g., adenovirus).
      • Helical (e.g., influenza virus).
      • Complex (e.g., bacteriophage).
  2. Envelope:
    • Lipid bilayer derived from the host cell membrane, present in some viruses (e.g., herpesvirus).
    • Contains viral glycoproteins for attachment.
  3. Core:
    • Contains the viral genome (DNA or RNA) and sometimes enzymes like reverse transcriptase (e.g., HIV).

Classification of Viruses

1. Based on Genetic Material

  1. DNA Viruses:
    • Double-stranded (e.g., herpesvirus, poxvirus).
    • Single-stranded (e.g., parvovirus).
  2. RNA Viruses:
    • Single-stranded (positive-sense or negative-sense, e.g., coronavirus, influenza virus).
    • Double-stranded (e.g., rotavirus).

2. Based on Host

  1. Animal Viruses:
    • Infect animals and humans.
    • Examples: Influenza virus, rabies virus.
  2. Plant Viruses:
    • Infect plants.
    • Examples: Tobacco mosaic virus (TMV).
  3. Bacteriophages:
    • Infect bacteria.
    • Examples: Lambda phage, T4 phage.

3. Based on Mode of Transmission

  1. Respiratory Viruses:
    • Spread via droplets or aerosols.
    • Examples: Influenza virus, SARS-CoV-2.
  2. Enteric Viruses:
    • Spread via fecal-oral route.
    • Examples: Rotavirus, poliovirus.
  3. Vector-Borne Viruses:
    • Transmitted by arthropod vectors.
    • Examples: Dengue virus, Zika virus.
  4. Bloodborne Viruses:
    • Spread through blood or bodily fluids.
    • Examples: HIV, hepatitis B virus.

Viral Replication

Viruses follow a multi-step process to replicate within host cells:

  1. Attachment:
    • Virus binds to specific receptors on the host cell surface.
  2. Penetration:
    • Virus enters the host cell via endocytosis or membrane fusion.
  3. Uncoating:
    • Viral capsid is removed, releasing the viral genome into the host cell.
  4. Replication:
    • Viral genome is replicated using host cell machinery.
    • DNA viruses replicate in the nucleus, while RNA viruses replicate in the cytoplasm.
  5. Assembly:
    • New viral particles are assembled from replicated genomes and capsid proteins.
  6. Release:
    • Viruses exit the host cell by lysis (non-enveloped viruses) or budding (enveloped viruses).

Diseases Caused by Viruses

VirusDiseaseMode of Transmission
Influenza virusInfluenzaRespiratory droplets
SARS-CoV-2COVID-19Respiratory droplets, aerosols
Hepatitis B virusHepatitis BBloodborne, sexual contact
HIVAIDSBloodborne, sexual contact
Rabies virusRabiesBite of infected animals
PoliovirusPoliomyelitisFecal-oral
RotavirusGastroenteritisFecal-oral
Dengue virusDengue feverAedes mosquito bite
Herpes simplex virusHerpes (oral/genital)Direct contact
Varicella-zoster virusChickenpox, shinglesRespiratory droplets, direct contact

Laboratory Diagnosis of Viral Infections

  1. Direct Detection:
    • Electron microscopy to visualize viruses.
    • PCR to detect viral DNA/RNA.
    • Immunofluorescence for viral antigens.
  2. Culture:
    • Grow viruses in cell lines, embryonated eggs, or animal models.
  3. Serology:
    • Detect viral-specific antibodies (IgM, IgG) in patient serum.
  4. Rapid Diagnostic Tests:
    • Antigen or antibody-based kits (e.g., COVID-19 rapid tests).

Prevention and Control of Viral Infections

  1. Vaccination:
    • Provides immunity by stimulating antibody production.
    • Examples:
      • Live-attenuated vaccines (e.g., MMR).
      • Inactivated vaccines (e.g., polio, hepatitis A).
  2. Antiviral Drugs:
    • Examples:
      • Acyclovir for herpes.
      • Oseltamivir for influenza.
      • HAART for HIV.
  3. Hygiene and Sanitation:
    • Handwashing, mask-wearing, and avoiding close contact reduce transmission.
  4. Vector Control:
    • Use of insecticides and bed nets to prevent vector-borne viral diseases.
  5. Public Health Measures:
    • Quarantine, isolation, and contact tracing during outbreaks.

Significance of Viruses

  1. Pathogenicity:
    • Viruses are responsible for significant morbidity and mortality globally.
  2. Research:
    • Study of viruses has advanced molecular biology and biotechnology (e.g., CRISPR, vaccines).
  3. Economic Impact:
    • Viral outbreaks can disrupt economies (e.g., COVID-19 pandemic).
  • Classification and general character of virus

Classification and General Characteristics of Viruses

Viruses are unique, obligate intracellular parasites that lack the machinery for independent life, requiring a host cell to replicate. Despite their simplicity, viruses exhibit a variety of structures and genetic compositions.


General Characteristics of Viruses

  1. Size:
    • Viruses are much smaller than bacteria, typically ranging from 20 to 300 nanometers in size.
    • Some, like the Poxvirus, can be larger, approaching the size of bacteria.
  2. Structure:
    • Capsid: A protein coat made of subunits called capsomeres, which protects the viral genome.
      • Shapes include icosahedral, helical, or complex.
    • Genetic Material:
      • DNA or RNA, but not both.
      • Can be single-stranded (ss) or double-stranded (ds).
      • Can be linear or circular.
    • Envelope (not present in all viruses):
      • A lipid bilayer derived from the host cell membrane, often with embedded viral glycoproteins.
      • Enveloped viruses include influenza and HIV.
    • Non-enveloped viruses (e.g., adenovirus, norovirus) lack a lipid bilayer.
  3. Obligate Intracellular Parasites:
    • Viruses cannot reproduce or metabolize on their own and must hijack the host cell’s machinery.
  4. Host Specificity:
    • Most viruses are highly specific to the species they infect, often targeting specific cell types.
  5. Replication:
    • Viruses reproduce through a complex process that involves attachment to the host cell, entry, uncoating, replication, assembly, and release (lysis or budding).
  6. Transmission:
    • Transmission occurs through respiratory droplets, bodily fluids, vectors (e.g., mosquitoes), fecal-oral route, or direct contact.

Virus Classification

Viruses are classified based on several factors: type of nucleic acid, symmetry of the capsid, presence or absence of an envelope, and replication strategy. The most widely used classification system is ICTV (International Committee on Taxonomy of Viruses).

1. Based on Nucleic Acid Type

  • DNA Viruses:
    • Double-stranded DNA (dsDNA):
      • Examples: Herpesvirus, Adenovirus, Poxvirus.
    • Single-stranded DNA (ssDNA):
      • Examples: Parvovirus.
  • RNA Viruses:
    • Positive-sense single-stranded RNA (+ssRNA):
      • Examples: Poliovirus, Hepatitis C, Zika virus.
    • Negative-sense single-stranded RNA (−ssRNA):
      • Examples: Influenza virus, Rabies virus.
    • Double-stranded RNA (dsRNA):
      • Examples: Rotavirus.
    • Retroviruses (ssRNA, but replicate through DNA intermediate):
      • Examples: HIV.

2. Based on Capsid Symmetry

  1. Icosahedral Viruses:
    • Spherical viruses with 20 triangular faces.
    • Examples: Adenovirus, Poliovirus, Herpesvirus.
  2. Helical Viruses:
    • Long, cylindrical viruses that form spiral structures.
    • Examples: Influenza virus, Rabies virus.
  3. Complex Viruses:
    • Viruses that do not fit neatly into either icosahedral or helical categories.
    • Examples: Poxvirus (contains a protein core and an envelope), Bacteriophages (have a tail structure for injecting DNA).

3. Based on Envelope Presence

  • Enveloped Viruses:
    • Have a lipid membrane derived from the host cell’s membrane.
    • Examples: HIV, Influenza virus, Herpes simplex virus.
  • Non-enveloped Viruses:
    • Lack a lipid envelope and are generally more stable in the environment.
    • Examples: Adenovirus, Norovirus, Poliovirus.

4. Based on Replication Strategy

  • Class I (dsDNA):
    • Example: Herpesvirus.
    • Replication occurs in the host cell’s nucleus, using the host’s DNA-dependent RNA polymerase.
  • Class II (ssDNA):
    • Example: Parvovirus.
    • Requires the host cell to synthesize a complementary DNA strand before transcription.
  • Class III (dsRNA):
    • Example: Rotavirus.
    • Transcribes its RNA genome into mRNA in the host cytoplasm.
  • Class IV (+ssRNA):
    • Example: Poliovirus.
    • Serves directly as mRNA to be translated by the host.
  • Class V (−ssRNA):
    • Example: Influenza virus.
    • Must be transcribed into +ssRNA before translation in the host.
  • Class VI (ssRNA, retroviruses):
    • Example: HIV.
    • Uses reverse transcriptase to convert its RNA into DNA, which is integrated into the host’s genome.
  • Class VII (dsDNA with reverse transcription):
    • Example: Hepatitis B.
    • Replicates via an RNA intermediate.

Example Viral Families and Their Diseases

Viral FamilyExamples of VirusesDiseases Caused
HerpesviridaeHerpes simplex virus, Varicella-zoster virusHerpes, Chickenpox, Shingles
PicornaviridaePoliovirus, Rhinovirus, Hepatitis A virusPolio, Common cold, Hepatitis A
RetroviridaeHuman Immunodeficiency Virus (HIV)AIDS
FlaviviridaeHepatitis C virus, Dengue virus, Zika virusHepatitis C, Dengue, Zika
OrthomyxoviridaeInfluenza virusInfluenza (Flu)
CoronaviridaeSARS-CoV-2, MERS-CoVCOVID-19, Middle East Respiratory Syndrome (MERS)
PoxviridaeSmallpox virus, Monkeypox virusSmallpox, Monkeypox

Viral Replication Cycle

  1. Attachment:
    • Virus attaches to host cell receptors using surface proteins.
  2. Penetration:
    • Virus enters the host cell via fusion (enveloped viruses) or endocytosis (non-enveloped).
  3. Uncoating:
    • Capsid is removed, releasing the viral genome into the host cell.
  4. Replication and Transcription:
    • DNA or RNA is replicated using host cell machinery.
  5. Assembly:
    • New viral genomes and capsid proteins are assembled into new viral particles.
  6. Budding/Release:
    • New viruses are released either by cell lysis or budding (for enveloped viruses).

Significance of Virus Classification

  1. Understanding Viral Behavior:
    • Classification helps in understanding how viruses interact with their hosts and replicate.
  2. Diagnostics and Treatment:
    • Knowledge of the virus’s structure and replication method informs diagnostic techniques and the development of antiviral drugs or vaccines.
  3. Public Health Measures:
    • Knowing the mode of transmission and pathogenicity helps in controlling viral outbreaks.

Conclusion

Viruses, though simple, are highly diverse and capable of causing a wide range of diseases in humans, animals, and plants. Their classification helps in understanding their biology, structure, replication, and the development of treatments and preventive measures.

  • Diseases caused by viruses in man and animal and their control.

Diseases Caused by Viruses in Humans and Animals and Their Control

Viruses can cause a wide range of diseases in both humans and animals. These diseases vary in severity, ranging from mild illnesses like the common cold to life-threatening conditions like AIDS, rabies, and viral hepatitis. The control of viral diseases involves vaccination, antiviral treatments, vector control, and public health measures.


Viral Diseases in Humans

1. Respiratory Viruses

  • Influenza (Flu)
    • Causative Agent: Influenza virus (Type A, B, and C)
    • Transmission: Respiratory droplets
    • Symptoms: Fever, cough, sore throat, muscle aches, fatigue.
    • Control:
      • Annual vaccination (inactivated or live-attenuated vaccines).
      • Antiviral drugs (e.g., oseltamivir) if administered early.
      • Public health measures: Hygiene, mask-wearing, quarantine during outbreaks.
  • COVID-19
    • Causative Agent: SARS-CoV-2 (Coronavirus)
    • Transmission: Respiratory droplets, aerosols, and fomites
    • Symptoms: Fever, cough, shortness of breath, fatigue, loss of taste or smell.
    • Control:
      • Vaccination (mRNA vaccines, viral vector vaccines).
      • Social distancing, face masks, hand hygiene, quarantine.
      • Antiviral treatments (e.g., remdesivir, monoclonal antibodies).
  • Common Cold
    • Causative Agent: Rhinoviruses, Coronaviruses
    • Transmission: Respiratory droplets, direct contact
    • Symptoms: Nasal congestion, sore throat, cough.
    • Control:
      • No specific antiviral treatment; symptomatic relief with decongestants and analgesics.
      • Hygiene practices, avoiding close contact.

2. Gastrointestinal Viruses

  • Rotavirus Infection
    • Causative Agent: Rotavirus
    • Transmission: Fecal-oral route (contaminated food or water)
    • Symptoms: Diarrhea, vomiting, fever, dehydration.
    • Control:
      • Oral rotavirus vaccination (RotaTeq, Rotarix).
      • Oral rehydration therapy (ORT) for dehydration.
      • Hygiene and sanitation measures to prevent transmission.
  • Hepatitis A
    • Causative Agent: Hepatitis A virus
    • Transmission: Fecal-oral route (contaminated food or water)
    • Symptoms: Jaundice, fatigue, abdominal pain, nausea.
    • Control:
      • Hepatitis A vaccination.
      • Proper sanitation and water treatment.
      • Good hygiene practices.
  • Hepatitis B
    • Causative Agent: Hepatitis B virus (HBV)
    • Transmission: Bloodborne, sexual contact, from mother to child during childbirth
    • Symptoms: Jaundice, fatigue, dark urine, chronic liver disease, cirrhosis, liver cancer.
    • Control:
      • Hepatitis B vaccination.
      • Screening and treatment (e.g., antiviral drugs such as tenofovir).
      • Safe injection practices and safe sexual practices.

3. Vector-Borne Viruses

  • Dengue Fever
    • Causative Agent: Dengue virus (DENV)
    • Transmission: Aedes mosquito bite
    • Symptoms: High fever, rash, severe headache, muscle pain, retro-orbital pain.
    • Control:
      • Mosquito control (elimination of breeding sites, insecticides, larvicides).
      • Vaccination (e.g., Dengvaxia, a vaccine for people with prior dengue infection).
      • Protective clothing and mosquito nets.
  • Zika Virus
    • Causative Agent: Zika virus
    • Transmission: Aedes mosquito bite, sexual contact
    • Symptoms: Fever, rash, joint pain, conjunctivitis. Associated with birth defects like microcephaly.
    • Control:
      • Mosquito control.
      • Avoidance of mosquito bites (repellents, nets).
      • No vaccine available; supportive care for symptoms.

4. Bloodborne Viruses

  • HIV/AIDS
    • Causative Agent: Human Immunodeficiency Virus (HIV)
    • Transmission: Blood, sexual contact, mother-to-child transmission during childbirth or breastfeeding
    • Symptoms: Acute infection (fever, lymphadenopathy), followed by asymptomatic phase, then AIDS (opportunistic infections, cancer).
    • Control:
      • Antiretroviral therapy (ART) to reduce viral load.
      • HIV prevention through condom use, safe sex practices, and pre-exposure prophylaxis (PrEP).
      • Screening of blood and organ donations.

5. Exanthematous Viruses

  • Measles
    • Causative Agent: Measles virus
    • Transmission: Respiratory droplets
    • Symptoms: High fever, cough, runny nose, conjunctivitis, and a characteristic maculopapular rash.
    • Control:
      • Measles vaccination (MMR vaccine).
      • Herd immunity and early detection during outbreaks.
  • Varicella (Chickenpox)
    • Causative Agent: Varicella-zoster virus
    • Transmission: Direct contact, respiratory droplets
    • Symptoms: Itchy rash, fever, malaise.
    • Control:
      • Varicella vaccination.
      • Antiviral treatment (e.g., acyclovir) in immunocompromised individuals.

Viral Diseases in Animals

1. Rabies

  • Causative Agent: Rabies virus (Rhabdovirus family)
  • Transmission: Bite from infected mammals (especially dogs, bats)
  • Symptoms: Anxiety, confusion, hallucinations, hydrophobia, paralysis, death.
  • Control:
    • Rabies vaccination for pets and high-risk animals.
    • Post-exposure prophylaxis (PEP) with rabies vaccine and rabies immunoglobulin.
    • Animal control programs (e.g., rabies vaccination of stray dogs).

2. Foot-and-Mouth Disease (FMD)

  • Causative Agent: Foot-and-mouth disease virus (FMDV)
  • Transmission: Direct contact with infected animals, contaminated feed, or fomites
  • Symptoms: Fever, blisters on the mouth, tongue, and hooves of livestock.
  • Control:
    • Vaccination of livestock.
    • Quarantine and culling of infected animals.
    • Biosecurity measures and movement restrictions.

3. Avian Influenza (Bird Flu)

  • Causative Agent: Influenza A virus (H5N1, H7N9)
  • Transmission: Direct contact with infected birds or contaminated surfaces
  • Symptoms: Respiratory symptoms, conjunctivitis, in severe cases, systemic infection.
  • Control:
    • Culling of infected poultry.
    • Vaccination of poultry in endemic regions.
    • Surveillance and biosecurity measures in poultry farms.

General Control Measures for Viral Diseases

  1. Vaccination:
    • Vaccines are the most effective method for preventing many viral infections in humans and animals (e.g., measles, polio, rabies).
  2. Antiviral Medications:
    • Medications like antiretrovirals (for HIV), antivirals for influenza (e.g., oseltamivir), and specific treatments for herpes simplex virus (e.g., acyclovir) can reduce the severity and spread of infections.
  3. Vector Control:
    • Reducing the population of vector organisms (mosquitoes, ticks, etc.) through insecticides, environmental management, and biological controls.
  4. Public Health Measures:
    • Surveillance, isolation, and quarantine during outbreaks.
    • Education on hygiene and safe practices (e.g., using condoms to prevent HIV, handwashing to prevent gastrointestinal viruses).
  5. Environmental Control:
    • Sanitation, clean water, and food handling practices are essential for preventing the spread of waterborne and foodborne viruses (e.g., Hepatitis A, Rotavirus).
  6. Animal Control and Vaccination:
    • Vaccinating pets and livestock and controlling wildlife reservoirs for diseases like rabies and foot-and-mouth disease.

Conclusion

Viral diseases pose a significant threat to human and animal health worldwide. The development of vaccines, antiviral medications, vector control strategies, and public health measures are key components in reducing the burden of these diseases. Preventive strategies such as vaccination, hygiene, vector control, and early treatment are critical for managing viral infections.

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